software/kermor/init_sarco_const_8m_source.html

 #include "SHDynamics.m"

 namespace models{

 namespace motorunit{


 /* (Autoinserted by mtoc++)

  * This source code has been filtered by the mtoc++ executable,

  * which generates code that can be processed by the doxygen documentation tool.

  *

  * On the other hand, it can neither be interpreted by MATLAB, nor can it be compiled with a C++ compiler.

  * Except for the comments, the function bodies of your M-file functions are untouched.

  * Consequently, the FILTER_SOURCE_FILES doxygen switch (default in our Doxyfile.template) will produce

  * attached source files that are highly readable by humans.

  *

  * Additionally, links in the doxygen generated documentation to the source code of functions and class members refer to

  * the correct locations in the source code browser.

  * However, the line numbers most likely do not correspond to the line numbers in the original MATLAB source files.

  */


 function  models.motorunit.SHDynamics.initSarcoConst() {


 /* % Base constant vector (with fast twitch values from original shorten_org) */

 c = zeros(105,1);

 c(1) = 1.0;

 c(2) = 4.8;

 c(3) = 150;

 c(4) = 0.000001;

 c(5) = 0.0025;

 c(6) = 0.0005;

 c(7) = 96485;

 c(8) = 350;

 c(9) = 350;

 c(10) = 0.0032;

 c(11) = 21875;

 c(12) = 21875;

 c(13) = 1.02;

 c(14) = -1.29;

 c(15) = 0.0081;

 c(16) = 0.288;

 c(17) = 0.0131;

 c(18) = 4.38;

 c(19) = 1.38;

 c(20) = 0.067;

 c(21) = -46;

 c(22) = -40;

 c(23) = -45;

 c(24) = 70;

 c(25) = -78;

 c(26) = -40;

 c(27) = 150;

 c(28) = 5.8;

 c(29) = 7.5;

 c(30) = 14.7;

 c(31) = 9;

 c(32) = 10;

 c(33) = 7;

 c(34) = 18;

 c(35) = 40;

 c(36) = 8314.41;

 c(37) = 293;

 c(38) = 19.65;

 c(39) = 64.8;

 c(40) = 804;

 c(41) = 11.1;

 c(42) = 0.4;

 c(43) = 950;

 c(44) = 1;

 c(45) = 1;

 c(46) = 13;

 c(47) = 10;

 c(48) = 0.000621;

 c(49) = 90;

 c(50) = 0.1;

 c(51) = 1.0;

 c(52) = 0.45;

 c(53) = 0.1;

 c(54) = 0.1;

 c(55) = 0.002;

 c(56) = 1000;

 c(57) = 0.2;

 c(58) = 0.2;

 c(59) = 4.5;

 c(60) = -20;

 c(61) = 4.875;

 c(62) = 1;

 c(63) = 0.00002;

 c(64) = 0.75;

 c(65) = 0.75;

 c(66) = 1.1;

 c(67) = 0.5;

 c(68) = 0.04425;

 c(69) = 0.115;

 c(70) = 140;

 c(71) = 0.0417;

 c(72) = 0.0005;

 c(73) = 1500;

 c(74) = 0.000033;

 c(75) = 0.003;

 c(76) = 0.000004;

 c(77) = 0.005;

 c(78) = 31000;

 c(79) = 0.15;

 c(80) = 30;

 c(81) = 0.0015;

 c(82) = 0.15;

 c(83) = 0.375;

 c(84) = 1.5;

 c(85) = 0;

 c(86) = 0.15;

 c(87) = 0.15;

 c(88) = 0.05;

 c(89) = 1.5;

 c(90) = 15;

 c(91) = 0.24;

 c(92) = 0.18;

 c(93) = 0.12;

 c(94) = 0.00002867;

 c(95) = 0.00000362;

 c(96) = 1;

 c(97) = 0.0001;

 c(98) = 6;

 c(99) = 300;

 c(100) =  0.95*c(66)* pi*(c(67)^2);

 c(101) =  0.05*c(66)* pi*(c(67)^2);

 c(102) =  0.01*c(100);

 c(103) =  0.99*c(100);

 c(104) =  0.01*c(101);

 c(105) =  0.99*c(101);


 positions = [1 2 8 9 10 11 12 13 14 25 28 38 39 40 41 48 49 61 63 68 71 72 74 75 89 90 91 92 93 94 99];

 slow = [this.System.C_m_slow 2.79 559 559 0.00174 40229.885 40229.885 0.34 -0.43 ...

     -68 7.1 3.275 10.8 134 1.85 0.0001656 70 2.4375 4e-05 0.0885 0 0 0 0 ...

     .05, .5, 0.008, 0.006, 0.004 ... /*  Human muscle, for mouse use 0.5 5 0.08 0.06 0.04 */


     3.94e-06 60];

 fast = [this.System.C_m_fast 4.8 350 350 0.0032 21875 21875 1.02 -1.29 -78 5.8 ...

     19.65 64.8 804 11.1 0.000621 90 4.875 2e-05 0.04425 0.0417 0.0005 3.3e-05 0.003 ...

     .15, 1.5, 0.024, 0.018, 0.012 ... /*  Human muscle, for mouse use 1.5 15 0.24 0.18 0.12 */


     2.867e-05 300];


 /*  Remainders from former version:

  * c3(74) = 0.05;

  * c3(75) = 1.E4;

  * c3(76) = 0;

  * c3(77) = 3.4;

  * c3(78) = 1000; */


 this.SarcoConst_slow= slow;

 this.SarcoConst_fast= fast;

 this.SarcoConst_dynpos= positions;

 this.SarcoConst_base= c;

 end

 }

 };

 };

SHDynamics.m